Ideally, it's possible to tell Spark that each task will want 4 cores in this example. from hyperopt.fmin import fmin from sklearn.metrics import f1_score from sklearn.ensemble import RandomForestClassifier def model_metrics(model, x, y): """ """ yhat = model.predict(x) return f1_score(y, yhat,average= 'micro') def bayes_fmin(train_x, test_x, train_y, test_y, eval_iters=50): "" " bayes eval_iters . For machine learning specifically, this means it can optimize a model's accuracy (loss, really) over a space of hyperparameters. If you would like to change your settings or withdraw consent at any time, the link to do so is in our privacy policy accessible from our home page.. Toggle navigation Hot Examples. Each trial is generated with a Spark job which has one task, and is evaluated in the task on a worker machine. Too large, and the model accuracy does suffer, but small values basically just spend more compute cycles. In each section, we will be searching over a bounded range from -10 to +10, We can use the various packages under the hyperopt library for different purposes. Hyperparameter tuning is an essential part of the Data Science and Machine Learning workflow as it squeezes the best performance your model has to offer. Find centralized, trusted content and collaborate around the technologies you use most. If parallelism is 32, then all 32 trials would launch at once, with no knowledge of each others results. The latter runs 2 configs on 3 workers at the end which also thus has an idle worker (apart from 1 more model training function call compared to the former approach). . Because the Hyperopt TPE generation algorithm can take some time, it can be helpful to increase this beyond the default value of 1, but generally no larger than the SparkTrials setting parallelism. We'll be trying to find the best values for three of its hyperparameters. Launching the CI/CD and R Collectives and community editing features for What does the "yield" keyword do in Python? For example, classifiers are often optimizing a loss function like cross-entropy loss. 10kbscore A higher number lets you scale-out testing of more hyperparameter settings. About: Sunny Solanki holds a bachelor's degree in Information Technology (2006-2010) from L.D. It uses conditional logic to retrieve values of hyperparameters penalty and solver. the dictionary must be a valid JSON document. This expresses the model's "incorrectness" but does not take into account which way the model is wrong. date-times, you'll be fine. Hyperopt is a Python library that can optimize a function's value over complex spaces of inputs. Run the tuning algorithm with Hyperopt fmin () Set max_evals to the maximum number of points in hyperparameter space to test, that is, the maximum number of models to fit and evaluate. Below we have listed important sections of the tutorial to give an overview of the material covered. There's more to this rule of thumb. This can be bad if the function references a large object like a large DL model or a huge data set. It may also be necessary to, for example, convert the data into a form that is serializable (using a NumPy array instead of a pandas DataFrame) to make this pattern work. It gives least value for loss function. Because Hyperopt proposes new trials based on past results, there is a trade-off between parallelism and adaptivity. Hyperopt calls this function with values generated from the hyperparameter space provided in the space argument. Do you want to save additional information beyond the function return value, such as other statistics and diagnostic information collected during the computation of the objective? Done right, Hyperopt is a powerful way to efficiently find a best model. This simple example will help us understand how we can use hyperopt. Yet, that is how a maximum depth parameter behaves. best = fmin (fn=lgb_objective_map, space=lgb_parameter_space, algo=tpe.suggest, max_evals=200, trials=trials) Is is possible to modify the best call in order to pass supplementary parameter to lgb_objective_map like as lgbtrain, X_test, y_test? You can refer this section for theories when you have any doubt going through other sections. . If k-fold cross validation is performed anyway, it's possible to at least make use of additional information that it provides. Setup a python 3.x environment for dependencies. If there is an active run, SparkTrials logs to this active run and does not end the run when fmin() returns. SparkTrials takes a parallelism parameter, which specifies how many trials are run in parallel. Defines the hyperparameter space to search. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. The objective function optimized by Hyperopt, primarily, returns a loss value. You can refer to it later as well. !! Optuna Hyperopt API Optuna HyperoptOptunaHyperopt . Jordan's line about intimate parties in The Great Gatsby? We need to provide it objective function, search space, and algorithm which tries different combinations of hyperparameters. The max_eval parameter is simply the maximum number of optimization runs. As you might imagine, a value of 400 strikes a balance between the two and is a reasonable choice for most situations. We can notice from the output that it prints all hyperparameters combinations tried and their MSE as well. Hyperopt is a powerful tool for tuning ML models with Apache Spark. When you call fmin() multiple times within the same active MLflow run, MLflow logs those calls to the same main run. Activate the environment: $ source my_env/bin/activate. The arguments for fmin() are shown in the table; see the Hyperopt documentation for more information. The TPE algorithm tries different values of hyperparameter x in the range [-10,10] evaluating line formula each time. Was Galileo expecting to see so many stars? For regression problems, it's reg:squarederrorc. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Hope you enjoyed this article about how to simply implement Hyperopt! While these will generate integers in the right range, in these cases, Hyperopt would not consider that a value of "10" is larger than "5" and much larger than "1", as if scalar values. Though function tried 100 different values, we don't have information about which values were tried, objective values during trials, etc. optimization Tree of Parzen Estimators (TPE) Adaptive TPE. It returns a dict including the loss value under the key 'loss': return {'status': STATUS_OK, 'loss': loss}. The output of the resultant block of code looks like this: Where we see our accuracy has been improved to 68.5%! Allow Necessary Cookies & Continue This will be a function of n_estimators only and it will return the minus accuracy inferred from the accuracy_score function. Do you want to communicate between parallel processes? Hence, it's important to tune the Spark-based library's execution to maximize efficiency; there is no Hyperopt parallelism to tune or worry about. Please make a NOTE that we can save the trained model during the hyperparameters optimization process if the training process is taking a lot of time and we don't want to perform it again. Would the reflected sun's radiation melt ice in LEO? SparkTrials takes two optional arguments: parallelism: Maximum number of trials to evaluate concurrently. In this section, we have printed the results of the optimization process. Now, you just need to fit a model, and the good news is that there are many open source tools available: xgboost, scikit-learn, Keras, and so on. You should add this to your code: this will print the best hyperparameters from all the runs it made. If targeting 200 trials, consider parallelism of 20 and a cluster with about 20 cores. We have put line formula inside of python function abs() so that it returns value >=0. or with conda: $ conda activate my_env. However, I found a difference in the behavior when running Hyperopt with Ray and Hyperopt library alone. We have used mean_squared_error() function available from 'metrics' sub-module of scikit-learn to evaluate MSE. The problem occured when I tried to recall the 'fmin' function with a higher number of iterations ('max_eval') but keeping the 'trials' object. Hyperopt has to send the model and data to the executors repeatedly every time the function is invoked. To recap, a reasonable workflow with Hyperopt is as follows: Consider choosing the maximum depth of a tree building process. The range should include the default value, certainly. If we don't use abs() function to surround the line formula then negative values of x can keep decreasing metric value till negative infinity. and The disadvantage is that the generalization error of this final model can't be evaluated, although there is reason to believe that was well estimated by Hyperopt. Please feel free to check below link if you want to know about them. To log the actual value of the choice, it's necessary to consult the list of choices supplied. Sometimes it will reveal that certain settings are just too expensive to consider. When using any tuning framework, it's necessary to specify which hyperparameters to tune. This would allow to generalize the call to hyperopt. For a fixed max_evals, greater parallelism speeds up calculations, but lower parallelism may lead to better results since each iteration has access to more past results. How to Retrieve Statistics Of Best Trial? For example: Although up for debate, it's reasonable to instead take the optimal hyperparameters determined by Hyperopt and re-fit one final model on all of the data, and log it with MLflow. In this simple example, we have only one hyperparameter named x whose different values will be given to the objective function in order to minimize the line formula. The hyperparameters fit_intercept and C are the same for all three cases hence our final search space consists of three key-value pairs (C, fit_intercept, and cases). Q1) What is max_eval parameter in optim.minimize do? In this case the call to fmin proceeds as before, but by passing in a trials object directly, This is because Hyperopt is iterative, and returning fewer results faster improves its ability to learn from early results to schedule the next trials. However, in a future post, we can. 542), We've added a "Necessary cookies only" option to the cookie consent popup. *args is any state, where the output of a call to early_stop_fn serves as input to the next call. If you have hp.choice with two options on, off, and another with five options a, b, c, d, e, your total categorical breadth is 10. Hyperopt" fmin" I would like to stop the entire process when max_evals are reached or when time passed (from the first iteration not each trial) > timeout. It's OK to let the objective function fail in a few cases if that's expected. Algorithms. They're not the parameters of a model, which are learned from the data, like the coefficients in a linear regression, or the weights in a deep learning network. We can notice that both are the same. The consent submitted will only be used for data processing originating from this website. We provide a versatile platform to learn & code in order to provide an opportunity of self-improvement to aspiring learners. It should not affect the final model's quality. The second step will be to define search space for hyperparameters. See the error output in the logs for details. His IT experience involves working on Python & Java Projects with US/Canada banking clients. Hyperopt search algorithm to use to search hyperparameter space. That section has many definitions. SparkTrials takes two optional arguments: parallelism: Maximum number of trials to evaluate concurrently. However, the interested reader can view the documentation here and there are also several research papers published on the topic if thats more your speed. This means the function is magically serialized, like any Spark function, along with any objects the function refers to. This value will help it make a decision on which values of hyperparameter to try next. Set parallelism to a small multiple of the number of hyperparameters, and allocate cluster resources accordingly. We are then printing hyperparameters combination that was tried and accuracy of the model on the test dataset. With a 32-core cluster, it's natural to choose parallelism=32 of course, to maximize usage of the cluster's resources. An optional early stopping function to determine if fmin should stop before max_evals is reached. ['HYPEROPT_FMIN_SEED'])) Thus, for replicability, I worked with the env['HYPEROPT_FMIN_SEED'] pre-set. The search space refers to the name of hyperparameters and their range of values that we want to give to the objective function for evaluation. The Trials instance has a list of attributes and methods which can be explored to get an idea about individual trials. SparkTrials logs tuning results as nested MLflow runs as follows: When calling fmin(), Databricks recommends active MLflow run management; that is, wrap the call to fmin() inside a with mlflow.start_run(): statement. For models created with distributed ML algorithms such as MLlib or Horovod, do not use SparkTrials. We have declared a dictionary where keys are hyperparameters names and values are calls to function from hp module which we discussed earlier. We have just tuned our model using Hyperopt and it wasn't too difficult at all! For example, if choosing Adam versus SGD as the optimizer when training a neural network, then those are clearly the only two possible choices. By voting up you can indicate which examples are most useful and appropriate. Although a single Spark task is assumed to use one core, nothing stops the task from using multiple cores. Note: Some specific model types, like certain time series forecasting models, estimate the variance of the prediction inherently without cross validation. Optimizing a model's loss with Hyperopt is an iterative process, just like (for example) training a neural network is. Upgrade to Microsoft Edge to take advantage of the latest features, security updates, and technical support. This way we can be sure that the minimum metric value returned will be 0. Do we need an option for an explicit `max_evals` ? You can even send us a mail if you are trying something new and need guidance regarding coding. The bad news is also that there are so many of them, and that they each have so many knobs to turn. The algo parameter can also be set to hyperopt.random, but we do not cover that here as it is widely known search strategy. - RandomSearchGridSearch1RandomSearchpython-sklear. It's also not effective to have a large parallelism when the number of hyperparameters being tuned is small. All rights reserved. As you can see, it's nearly a one-liner. Now we define our objective function. The objective function has to load these artifacts directly from distributed storage. Whatever doesn't have an obvious single correct value is fair game. Apache, Apache Spark, Spark and the Spark logo are trademarks of theApache Software Foundation. How does a fan in a turbofan engine suck air in? The wine dataset has the measurement of ingredients used in the creation of three different types of wine. We'll be trying to find a minimum value where line equation 5x-21 will be zero. Scalar parameters to a model are probably hyperparameters. It improves the accuracy of each loss estimate, and provides information about the certainty of that estimate, but it comes at a price: k models are fit, not one. ; Hyperopt-convnet: Convolutional computer vision architectures that can be tuned by hyperopt. The objective function starts by retrieving values of different hyperparameters. For example, xgboost wants an objective function to minimize. How to Retrieve Statistics Of Individual Trial? In this section, we'll again explain how to use hyperopt with scikit-learn but this time we'll try it for classification problem. This fmin function returns a python dictionary of values. As a part of this section, we'll explain how to use hyperopt to minimize the simple line formula. For a fixed max_evals, greater parallelism speeds up calculations, but lower parallelism may lead to better results since each iteration has access to more past results. In this section, we have again created LogisticRegression model with the best hyperparameters setting that we got through an optimization process. Asking for help, clarification, or responding to other answers. Hyperparameters are inputs to the modeling process itself, which chooses the best parameters. The target variable of the dataset is the median value of homes in 1000 dollars. We and our partners use data for Personalised ads and content, ad and content measurement, audience insights and product development. Example of an early stopping function. Not the answer you're looking for? Then, it explains how to use "hyperopt" with scikit-learn regression and classification models. Objective function. and diagnostic information than just the one floating-point loss that comes out at the end. fmin () max_evals # hyperopt def hyperopt_exe(): space = [ hp.uniform('x', -100, 100), hp.uniform('y', -100, 100), hp.uniform('z', -100, 100) ] # trials = Trials() # best = fmin(objective_hyperopt, space, algo=tpe.suggest, max_evals=500, trials=trials) That is, given a target number of total trials, adjust cluster size to match a parallelism that's much smaller. and pass an explicit trials argument to fmin. But if the individual tasks can each use 4 cores, then allocating a 4 * 8 = 32-core cluster would be advantageous. are patent descriptions/images in public domain? It uses the results of completed trials to compute and try the next-best set of hyperparameters. This is useful in the early stages of model optimization where, for example, it's not even so clear what is worth optimizing, or what ranges of values are reasonable. All algorithms can be parallelized in two ways, using: The value is decided based on the case. suggest, max . . What the above means is that it is a optimizer that could minimize/maximize the loss function/accuracy (or whatever metric) for you. All algorithms can be parallelized in two ways, using: 669 from. Refresh the page, check Medium 's site status, or find something interesting to read. If we try more than 100 trials then it might further improve results. Install dependencies for extras (you'll need these to run pytest): Linux . Hyperopt provides great flexibility in how this space is defined. Instead of fitting one model on one train-validation split, k models are fit on k different splits of the data. ML model can accept a wide range of hyperparameters combinations and we don't know upfront which combination will give us the best results. When going through coding examples, it's quite common to have doubts and errors. There are many optimization packages out there, but Hyperopt has several things going for it: This last point is a double-edged sword. Python4. The simplest protocol for communication between hyperopt's optimization We have multiplied value returned by method average_best_error() with -1 to calculate accuracy. To do this, the function has to split the data into a training and validation set in order to train the model and then evaluate its loss on held-out data. Below is some general guidance on how to choose a value for max_evals, hp.uniform py in fmin (fn, space, algo, max_evals, timeout, loss_threshold, trials, rstate, allow_trials_fmin, pass_expr_memo_ctrl, catch_eval_exceptions, verbose, return_argmin, points_to_evaluate, max_queue_len, show_progressbar . I am not going to dive into the theoretical detials of how this Bayesian approach works, mainly because it would require another entire article to fully explain! We have used TPE algorithm for the hyperparameters optimization process. Some machine learning libraries can take advantage of multiple threads on one machine. Writing the function above in dictionary-returning style, it SparkTrials is designed to parallelize computations for single-machine ML models such as scikit-learn. We'll be using the Boston housing dataset available from scikit-learn. from hyperopt import fmin, atpe best = fmin(objective, SPACE, max_evals=100, algo=atpe.suggest) I really like this effort to include new optimization algorithms in the library, especially since it's a new original approach not just an integration with the existing algorithm. We'll try to find the best values of the below-mentioned four hyperparameters for LogisticRegression which gives the best accuracy on our dataset. A Medium publication sharing concepts, ideas and codes. I am trying to tune parameters using Hyperas but I can't interpret few details regarding it. In this section, we have created Ridge model again with the best hyperparameters combination that we got using hyperopt. Our last step will be to use an algorithm that tries different values of hyperparameter from search space and evaluates objective function using those values. HINT: To store numpy arrays, serialize them to a string, and consider storing FMin. Hyperopt will test max_evals total settings for your hyperparameters, in batches of size parallelism. If the value is greater than the number of concurrent tasks allowed by the cluster configuration, SparkTrials reduces parallelism to this value. Here are the examples of the python api CONSTANT.MIN_CAT_FEAT_IMPORTANT taken from open source projects. Hyperoptfminfmin algo tpe.suggest rand.suggest TPE partial n_start_jobs n_EI_candidates Hyperopt trials early_stop_fn See "How (Not) To Scale Deep Learning in 6 Easy Steps" for more discussion of this idea. SparkTrials is an API developed by Databricks that allows you to distribute a Hyperopt run without making other changes to your Hyperopt code. You can rate examples to help us improve the quality of examples. Consider the case where max_evals the total number of trials, is also 32. Hyperopt offers hp.uniform and hp.loguniform, both of which produce real values in a min/max range. As the target variable is a continuous variable, this will be a regression problem. Hyperopt iteratively generates trials, evaluates them, and repeats. However it may be much more important that the model rarely returns false negatives ("false" when the right answer is "true"). The next few sections will look at various ways of implementing an objective It is possible for fmin() to give your objective function a handle to the mongodb used by a parallel experiment. If k-fold cross validation tuned by hyperopt the next-best set of hyperparameters penalty solver! ) multiple times within the same active MLflow run, MLflow logs those to! Allocate cluster resources accordingly can also be set to hyperopt.random, but small basically... '' option to the modeling process itself, which specifies how many trials are run in parallel call fmin )! A call to hyperopt hyperopt code function available from hyperopt fmin max_evals ' sub-module scikit-learn... 542 ), we 'll again explain how to use `` hyperopt '' with scikit-learn but this we! This section, we do not cover that here as it is widely known search strategy the total number hyperparameters! How this space is defined choosing the maximum number of trials to concurrently! Would launch at once, with no knowledge of each others results which combination will give us best... Retrieve values of hyperparameters, in a min/max range, I found a difference in the Great Gatsby step! This means the function references a large object like a large hyperopt fmin max_evals or... More information that each task will want 4 cores, then allocating a 4 8. By method average_best_error ( ) function available from scikit-learn parallelize computations for single-machine ML models with Apache,. Important sections of the prediction inherently without cross validation if fmin should before! An objective function starts by retrieving values of hyperparameter to try next the number... Responding to other answers, then allocating a 4 * 8 = cluster... Consent submitted will only be used for data processing originating from this website the covered... And consider storing fmin for you from scikit-learn returned will be zero double-edged sword used for data processing from! Settings for your hyperparameters, and repeats arguments for fmin ( ) so that it is reasonable... Get an idea about individual trials ideas and codes use 4 cores in section... '' with scikit-learn regression and classification models it provides best parameters just too expensive to consider like any Spark,. ( or whatever metric ) for you combinations and we do n't have an single. Regarding coding if we try more than 100 trials then it might further improve results range of.... Estimators ( TPE ) Adaptive TPE with scikit-learn regression and classification models maximum depth behaves. Learning libraries can take advantage of the number of trials, is also that there many. Takes a parallelism parameter, which specifies how many trials are run in.! A `` necessary cookies only '' option to the modeling process itself, chooses. The modeling process itself, which specifies how many trials are run in parallel a hyperopt fmin max_evals. Asking for help, clarification, or responding to other answers useful and appropriate the., which specifies how many trials are run in parallel results, there is a powerful tool for tuning models. Parameter, which specifies how many trials are run in parallel it SparkTrials is an api developed Databricks... Be advantageous, is also that there are many optimization packages out there, we. ): Linux is that it prints all hyperparameters combinations and we do not use SparkTrials process itself, chooses! 4 * 8 = 32-core cluster would be advantageous hyperopt fmin max_evals any tuning,! In 1000 dollars above means is that it provides parameter is simply the maximum depth of a call hyperopt... Other questions tagged, where the output of the resultant block of code looks like this where. What is max_eval parameter is simply the maximum depth of a call to early_stop_fn serves input... Line formula function optimized by hyperopt, primarily, returns a Python library that can be bad if function! Ridge model again with the best values of hyperparameter to try next versatile platform to learn code. Do not use SparkTrials of Parzen Estimators ( TPE ) Adaptive TPE cases if that 's expected choice, 's... Java Projects with US/Canada banking clients to distribute a hyperopt run without other... Here are the examples of the material covered want 4 cores, allocating. Other changes to your code: this will be to define search space hyperparameters! 542 ), we have used mean_squared_error ( ) so that it provides both of which produce real values a!, ideas and codes parallelize computations for single-machine ML models such as scikit-learn to log the actual value of in... A worker machine again created LogisticRegression model with the best hyperparameters combination that was tried accuracy. Allow to generalize the call to early_stop_fn serves as input to the next call number lets you testing! Fmin ( ) are shown in the Great Gatsby the Boston housing dataset available from 'metrics ' sub-module of to. But we do not use SparkTrials trials instance has a list of attributes and methods can! Single correct value is greater than the number of hyperparameters for single-machine ML such... You to distribute a hyperopt run without making other changes to your hyperopt code three! Function above in dictionary-returning style, it 's possible to at least make use additional. You can rate examples to help us improve the quality of examples during trials, is also.. The results of the material covered simply the maximum number of hyperparameters directly from distributed storage space.. Logic to retrieve values of hyperparameter x in the Great Gatsby specify which hyperparameters to tune in parallel parallelism..., with no knowledge of each others results Spark logo are trademarks of theApache Software Foundation Hyperas... Editing features for What does the `` yield '' keyword do in?! To early_stop_fn serves as input to the executors repeatedly every time the function is invoked time series forecasting,... Past results, there is a double-edged sword Java Projects with US/Canada banking.... That certain settings are just too expensive to consider changes to your hyperopt code settings are too. Expresses the model 's quality the reflected sun 's radiation melt ice in LEO accept a wide range hyperparameters. Example, classifiers are often optimizing a model 's quality also be set hyperopt.random... Parallelism is 32, then allocating a 4 * 8 = 32-core cluster, 's. Is wrong flexibility in how this space is defined is invoked end the run when fmin ( ) -1... Doubts and errors Spark job which has one task, and allocate cluster resources accordingly fair.. Types, like any Spark function, search space for hyperparameters developed by that. Simple example will help it make a decision on which values were tried, objective values trials! Ml algorithms such as scikit-learn, xgboost wants an objective function fail in a min/max range idea. Set to hyperopt.random, but we do not cover that here as is... Is an api developed by Databricks that allows you to distribute a run! Follows: consider choosing the maximum number of trials to evaluate concurrently, classifiers are optimizing. Which values of different hyperparameters Spark job which has one task, technical... Tried and accuracy of the choice, it 's also not effective to have a large parallelism when the of. Many optimization packages out there, but we do n't know upfront which combination will give us best... Used mean_squared_error hyperopt fmin max_evals ) with -1 to calculate accuracy which specifies how many trials run... Opportunity of self-improvement to aspiring learners others results the consent submitted will only be used data. Databricks that allows you to distribute a hyperopt run without making other to. And community editing features for What does the `` yield '' keyword do in Python ] evaluating formula... To your hyperopt code maximum number of trials, consider parallelism of 20 and a cluster with about cores... Computations for single-machine ML models with Apache Spark, Spark and the model does. Will be to define search space for hyperparameters 10kbscore a higher number lets you testing... Is defined using hyperopt and it was n't too difficult at all completed trials evaluate... Each others results ), we 'll be trying to tune calls this with... And codes runs it made * 8 = 32-core cluster would be advantageous, Reach developers technologists. Tasks can each use 4 cores in this example the hyperparameters optimization process & worldwide... A Spark job which has one task, and the Spark logo trademarks! [ -10,10 ] evaluating line formula of them, and allocate cluster resources accordingly the space argument 400 strikes balance... Going through coding examples, it 's reg: squarederrorc the case where max_evals the total of... Ca n't interpret few details regarding it model again with the best of... The above means is that it returns value > =0 loss that comes out at the end is 32. All the runs it made its hyperparameters output that it provides parallelism of and..., classifiers are often optimizing a loss function like cross-entropy loss you to distribute a run! Targeting 200 trials, etc function fail in a min/max range threads one... Would allow to generalize the call to hyperopt -10,10 ] evaluating line.! Parameter in optim.minimize do method average_best_error ( ) multiple times within the same main run stop max_evals. Use to search hyperparameter space provided in the table ; see the hyperopt documentation for more.. See our accuracy has been improved to 68.5 % the cluster configuration, logs... Each trial is generated with a Spark job which has one task, and the model 's `` ''... The list of attributes and methods which can be parallelized in two,... Where the output of the latest features, security updates, and consider fmin.

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hyperopt fmin max_evals